Function reference • beter

All functions

beter_options(): Set options for the beter package

find_tags() find_tags_xml() find_tags_toml() find_tags_str(): Find moustache tags.

list2toml(): list to toml

parse_config(): Recursively parse TOML config First recursively parse any TOML configs linked in the template block and then process XML chunks by substituting the moustache tags using the content of the default block and any parameters from the parent TOML config.

process_template(): Process an XML template with TOML config.

read_sequences() read_fasta() read_nexus(): Read sequences from a file

sequences2xml(): Convert sequences to BEAST xml data block.

write_config(): Write TOML config

write_sequences() write_fasta() write_nexus(): Write sequences to a file